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If superproject was not available for a branch, then the next repo sync would also fail because --use-superproject is remembered across repo init. In such cases, hoping the hint to to use --no-use-superproject will help. Tested the code with the following commands and by forcing a failure. $ ./run_tests -v Bug: [google internal] b/187459275 Change-Id: Ie250812b7ba83afc230b5b1d154ba11f245f8b8a Reviewed-on: https://gerrit-review.googlesource.com/c/git-repo/+/305622 Reviewed-by: Xin Li <delphij@google.com> Tested-by: Raman Tenneti <rtenneti@google.com>